OBO Foundry dashboard analysis

Back to dashboard main page

/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           172
OWL/XML Syntax             3
unknown                    2
RDF/XML                    2
OWL Functional Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	178	148041.322222	782475.069177	0.0	1401.00	7026.0	28679.00	9525482.0
Declaration	178	28014.311111	182202.474892	0.0	410.75	1165.5	5113.25	2334937.0
SubClassOf	173	38139.650000	207960.820816	0.0	317.75	1239.5	6604.25	2334908.0
EquivalentClasses	122	2623.922222	13442.259131	0.0	0.00	25.0	197.00	125954.0
TransitiveObjectProperty	117	6.300000	11.043287	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	113	8.100000	17.010053	0.0	0.00	2.0	7.00	119.0
SubObjectPropertyOf	106	39.833333	92.129160	0.0	0.00	2.0	43.25	653.0
DisjointClasses	94	33.311111	132.975668	0.0	0.00	1.0	21.00	1535.0
ObjectPropertyRange	85	14.272222	26.628802	0.0	0.00	0.0	19.00	139.0
ObjectPropertyDomain	85	14.538889	27.189869	0.0	0.00	0.0	18.00	141.0
InverseObjectProperties	82	9.305556	17.666083	0.0	0.00	0.0	14.00	110.0
SubPropertyChainOf	68	9.211111	24.370967	0.0	0.00	0.0	2.00	143.0
ClassAssertion	61	72.505556	466.244134	0.0	0.00	0.0	17.25	5528.0
FunctionalObjectProperty	48	0.794444	1.683629	0.0	0.00	0.0	1.00	9.0
SymmetricObjectProperty	44	1.566667	8.358651	0.0	0.00	0.0	0.00	79.0
DataPropertyRange	41	1.027778	3.046072	0.0	0.00	0.0	0.00	30.0
IrrefexiveObjectProperty	36	0.605556	2.338641	0.0	0.00	0.0	0.00	26.0
DataPropertyDomain	35	0.950000	3.019999	0.0	0.00	0.0	0.00	32.0
DifferentIndividuals	34	0.688889	4.225870	0.0	0.00	0.0	0.00	56.0
AnnotationPropertyRangeOf	32	1.277778	9.813373	0.0	0.00	0.0	0.00	129.0
EquivalentObjectProperties	28	1.427778	5.423959	0.0	0.00	0.0	0.00	36.0
SubDataPropertyOf	26	0.622222	2.918168	0.0	0.00	0.0	0.00	33.0
FunctionalDataProperty	21	0.405556	1.306183	0.0	0.00	0.0	0.00	10.0
Rule	20	1.566667	5.339952	0.0	0.00	0.0	0.00	25.0
InverseFunctionalObjectProperty	19	0.150000	0.489841	0.0	0.00	0.0	0.00	3.0
AsymmetricObjectProperty	18	0.405556	2.168070	0.0	0.00	0.0	0.00	26.0
DisjointObjectProperties	17	0.233333	1.129097	0.0	0.00	0.0	0.00	10.0
ObjectPropertyAssertion	12	5.905556	56.395124	0.0	0.00	0.0	0.00	747.0
ReflexiveObjectProperty	11	0.111111	0.505709	0.0	0.00	0.0	0.00	4.0
AnnotationPropertyDomain	10	0.266667	1.622468	0.0	0.00	0.0	0.00	17.0
DisjointUnion	7	0.088889	0.562207	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.544444	5.777361	0.0	0.00	0.0	0.00	75.0
DatatypeDefinition	2	0.111111	1.417721	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005556	0.074536	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	177	116570.494444	612634.531112	0.0	1318.25	4843.0	20011.25	7004726.0
ObjectSomeValuesFrom	157	17727.361111	86044.967020	0.0	35.25	451.5	2724.75	824892.0
ObjectIntersectionOf	118	4355.555556	20294.955820	0.0	0.00	30.0	368.25	192146.0
ObjectUnionOf	86	28.033333	89.868489	0.0	0.00	0.0	17.25	767.0
ObjectAllValuesFrom	72	27.922222	148.247470	0.0	0.00	0.0	9.25	1764.0
ObjectComplementOf	64	7.827778	41.978690	0.0	0.00	0.0	2.00	527.0
ObjectMinCardinality	56	2.477778	8.454582	0.0	0.00	0.0	1.00	58.0
ObjectExactCardinality	44	8.944444	89.219754	0.0	0.00	0.0	0.00	1193.0
ObjectOneOf	43	3.727778	28.499893	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	24	0.233333	0.677656	0.0	0.00	0.0	0.00	4.0
DataSomeValuesFrom	22	7.072222	64.987238	0.0	0.00	0.0	0.00	859.0
DataExactCardinality	22	0.538889	1.642195	0.0	0.00	0.0	0.00	7.0
ObjectMaxCardinality	21	1.155556	5.986785	0.0	0.00	0.0	0.00	49.0
ObjectHasValue	19	139.533333	1593.552275	0.0	0.00	0.0	0.00	21288.0
DataHasValue	17	121.638889	1586.579733	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	16	0.238889	0.982324	0.0	0.00	0.0	0.00	6.0
DataAllValuesFrom	3	0.105556	1.038355	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.011111	0.105114	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
120	omo	0.944	0.938	0.950
9	bfo	0.828	0.883	0.772
147	ro	0.792	0.863	0.722
131	pato	0.689	0.933	0.444
64	go	0.666	0.849	0.483
102	ncbitaxon	0.613	0.847	0.378
21	cl	0.604	0.929	0.278
110	obi	0.572	0.732	0.411
142	pr	0.554	0.876	0.233
35	doid	0.528	0.939	0.117
113	ogms	0.515	0.796	0.233
69	hp	0.501	0.885	0.117
170	wbls	0.500	0.989	0.011
15	chebi	0.497	0.578	0.417
160	trans	0.488	0.948	0.028
44	envo	0.488	0.792	0.183
137	plana	0.486	0.967	0.006
163	uberon	0.485	0.620	0.350
127	opl	0.483	0.950	0.017
111	obib	0.482	0.948	0.017
12	caro	0.478	0.734	0.222
63	gno	0.477	0.949	0.006
51	fbdv	0.475	0.933	0.017
40	eco	0.474	0.943	0.006
32	ddpheno	0.472	0.937	0.006
136	phipo	0.472	0.937	0.006
59	gecko	0.470	0.940	0.000
58	fypo	0.469	0.937	0.000
36	dpo	0.469	0.937	0.000
73	iao	0.468	0.935	0.000
176	zeco	0.468	0.935	0.000
96	mp	0.464	0.894	0.033
157	symp	0.464	0.888	0.039
66	hancestro	0.463	0.908	0.017
42	ecto	0.458	0.910	0.006
45	eupath	0.456	0.901	0.011
122	omrse	0.455	0.817	0.094
132	pco	0.451	0.796	0.106
171	wbphenotype	0.451	0.891	0.011
99	mro	0.445	0.889	0.000
14	cdno	0.445	0.890	0.000
76	ido	0.439	0.767	0.111
10	bspo	0.436	0.789	0.083
75	ico	0.433	0.838	0.028
139	po	0.432	0.770	0.094
164	uo	0.431	0.696	0.167
149	rxno	0.427	0.848	0.006
138	planp	0.426	0.846	0.006
3	aism	0.421	0.842	0.000
143	psdo	0.421	0.843	0.000
34	disdriv	0.420	0.840	0.000
168	vto	0.419	0.839	0.000
18	chmo	0.418	0.785	0.050
129	ornaseq	0.416	0.832	0.000
8	bco	0.416	0.827	0.006
153	so	0.415	0.679	0.150
101	nbo	0.415	0.737	0.094
146	rbo	0.415	0.831	0.000
84	mf	0.410	0.792	0.028
175	xpo	0.410	0.815	0.006
179	zp	0.408	0.804	0.011
6	apollo_sv	0.407	0.720	0.094
46	exo	0.407	0.791	0.022
47	fao	0.406	0.795	0.017
172	xao	0.405	0.792	0.017
38	duo	0.405	0.792	0.017
95	mop	0.403	0.789	0.017
41	ecocore	0.402	0.792	0.011
39	ecao	0.401	0.801	0.000
2	agro	0.400	0.793	0.006
156	swo	0.400	0.793	0.006
94	mondo	0.399	0.769	0.028
173	xco	0.398	0.784	0.011
126	oostt	0.398	0.785	0.011
98	mpio	0.397	0.788	0.006
107	oarcs	0.397	0.793	0.000
27	cro	0.396	0.792	0.000
144	pso	0.396	0.792	0.000
24	clyh	0.395	0.789	0.000
155	stato	0.394	0.716	0.072
22	clao	0.393	0.786	0.000
57	fovt	0.393	0.786	0.000
141	ppo	0.392	0.784	0.000
117	ohpi	0.392	0.783	0.000
165	upheno	0.391	0.742	0.039
116	ohmi	0.390	0.774	0.006
62	geo	0.390	0.736	0.044
70	hsapdv	0.388	0.747	0.028
109	obcs	0.382	0.741	0.022
61	geno	0.382	0.752	0.011
4	amphx	0.380	0.760	0.000
135	peco	0.380	0.727	0.033
124	ons	0.378	0.733	0.022
82	maxo	0.377	0.743	0.011
86	mfoem	0.375	0.744	0.006
169	wbbt	0.375	0.739	0.011
17	chiro	0.374	0.748	0.000
77	ino	0.374	0.731	0.017
68	hom	0.374	0.748	0.000
158	taxrank	0.374	0.738	0.011
20	cio	0.374	0.748	0.000
150	sbo	0.374	0.748	0.000
31	ddanat	0.374	0.742	0.006
16	cheminf	0.374	0.749	0.000
54	fma	0.374	0.692	0.056
78	kisao	0.374	0.748	0.000
81	mamo	0.374	0.748	0.000
134	pdumdv	0.374	0.748	0.000
97	mpath	0.373	0.714	0.033
167	vt	0.373	0.730	0.017
178	zfs	0.373	0.736	0.011
72	htn	0.373	0.746	0.000
123	one	0.373	0.746	0.000
37	dron	0.373	0.664	0.083
55	fobi	0.373	0.747	0.000
87	mfomd	0.372	0.733	0.011
33	dideo	0.372	0.733	0.011
49	fbbt	0.371	0.720	0.022
29	cto	0.370	0.740	0.000
128	opmi	0.370	0.713	0.028
152	sepio	0.370	0.735	0.006
1	aeo	0.370	0.741	0.000
52	fideo	0.370	0.740	0.000
118	olatdv	0.369	0.738	0.000
92	mmusdv	0.369	0.738	0.000
114	ogsf	0.369	0.739	0.000
5	apo	0.368	0.737	0.000
89	miapa	0.368	0.736	0.000
83	mco	0.368	0.737	0.000
91	mmo	0.367	0.728	0.006
43	emapa	0.367	0.735	0.000
140	poro	0.366	0.733	0.000
115	ohd	0.365	0.731	0.000
50	fbcv	0.365	0.714	0.017
106	oae	0.365	0.647	0.083
159	to	0.365	0.724	0.006
154	spd	0.364	0.729	0.000
108	oba	0.364	0.711	0.017
28	cteno	0.364	0.729	0.000
130	ovae	0.364	0.729	0.000
85	mfmo	0.363	0.727	0.000
71	hso	0.362	0.724	0.000
13	cdao	0.359	0.713	0.006
25	cmo	0.357	0.675	0.039
79	labo	0.356	0.713	0.000
30	cvdo	0.356	0.702	0.011
88	mi	0.354	0.692	0.017
26	cob	0.353	0.689	0.017
177	zfa	0.353	0.690	0.017
121	omp	0.351	0.685	0.017
104	ncro	0.351	0.692	0.011
145	pw	0.350	0.695	0.006
60	genepio	0.350	0.666	0.033
105	nomen	0.348	0.697	0.000
103	ncit	0.346	0.581	0.111
80	ma	0.346	0.693	0.000
48	fbbi	0.344	0.687	0.000
162	txpo	0.344	0.689	0.000
161	tto	0.342	0.684	0.000
151	scdo	0.342	0.684	0.000
119	omit	0.341	0.664	0.017
67	hao	0.341	0.681	0.000
11	bto	0.337	0.645	0.028
100	ms	0.336	0.660	0.011
148	rs	0.335	0.669	0.000
133	pdro	0.334	0.645	0.022
90	micro	0.332	0.658	0.006
56	foodon	0.331	0.579	0.083
74	iceo	0.329	0.657	0.000
166	vo	0.324	0.570	0.078
65	gsso	0.322	0.638	0.006
7	aro	0.322	0.622	0.022
125	ontoneo	0.321	0.641	0.000
53	flopo	0.320	0.634	0.006
112	ogg	0.319	0.587	0.050
23	clo	0.316	0.576	0.056
19	cido	0.302	0.599	0.006
93	mod	0.298	0.586	0.011
174	xlmod	0.000	0.000	0.000
0	EPSO	0.000	0.000	0.000

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	180.0	0.404606	0.095712	0.0	0.365	0.381	0.43125	0.944
score_dash	180.0	0.757644	0.122634	0.0	0.713	0.745	0.80675	0.989
score_impact	180.0	0.051572	0.131059	0.0	0.000	0.011	0.02800	0.950

OBO dependency graph